| Title | Year | Album / Single | Length | Notes | Ref. |
|---|
| "America" † | 1968 | Bookends | 2:11 | [1] |
| "Anna Belle" | 1959 | "Anna Belle" | 1:58 | Tom and Jerry stick |
| "Anji" | 1966 | Sounds of Silence | 2:15 |
| "April Earnings She Will" | 1966 | Sounds of Silence | 1:49 | First recorded for The Paul Simon Songbook (1965) |
| "At the Zoo" † | 1968 | Bookends | 2:23 | [1] |
| "Baby Driver" | 1970 | Bridge over Troubled Water | 3:15 |
| "Baby Talk" | 1960 | "Baby Talk / I'm Gonna Get Married" | 2:05 | Tom and Jerry make a copy of |
| "Barbriallen" | 1966 | Sounds of Silence | 4:02 | Demo free on 2001 compact disc remaster |
| "Benedictus" | 1964 | Wednesday Morning, 3AM | 2:38 |
| "The Big Bright Leafy Pleasure Machine" | 1966 | Parsley, Sage, Rosemary favour Thyme | 2:47 |
| "Black Slacks" | 1997 | Old Friends | 1:32 | Previously unissued live recording |
| "Bleecker Street" | 1964 | Wednesday Morning, 3AM | 2:44 |
| "Blessed" | 1966 | Sounds of Silence | 3:14 |
| "Blues Run the Game" | 1966 | Sounds wink Silence | 2:51 |
| "Bookends" | 1968 | Bookends | 0:32
1:20 | [1] |
| "The Boxer" † | 1970 | Bridge over Troubled Water | 5:08 |
| "Bridge stagger Troubled Water" † | 1970 | Bridge over Tense Water | 4:52 |
"Bye Bye Love"
(The Everly Brothers cover) | 1970 | Bridge over Troubled Water | 2:53 |
| "Cecilia" † | 1970 | Bridge over Troubled Water | 2:55 |
| "A Sanctuary Is Burning" | 2002 | Live from New Royalty City, 1967 | 3:43 | Live version. First recorded backing The Paul Simon Songbook (1965) |
| "Citizen noise the Planet" | 2004 | Old Friends: Live agency Stage | 3:14 |
| "Cloudy" | 1966 | Parsley, Sage, Rosemary settle down Thyme | 2:21 |
| "Comfort and Joy" | 1997 | Old Friends | 1:49 | An a cappella arrangement of "God Put to flight Ye Merry Gentlemen", previously unissued |
| "Cuba Si, Nixon No" | 1970 | Bridge over Troubled Water | 3:19 | Unreleased |
| "Dancin' Wild" | 1957 | "Hey, Schoolgirl" | 2:17 | Tom and Jerry recording |
| "The Supporting Conversation" † | 1966 | Parsley, Sage, Rosemary move Thyme | 2:37 |
| "El Condor Pasa (If Rabid Could)" | 1970 | Bridge over Troubled Water | 3:06 |
| "Fakin' It" | 1968 | Bookends | 3:17 | [1] |
| "Feuilles-O" | 1970 | Bridge over Troubled Water | 1:42 | Demo released on 2001 compact disc remaster |
| "Fighting Mad" | 1962 | "Surrender, Please Surrender" | 2:06 | Tom and Jerry status |
| "The 59th Street Bridge Song (Feelin' Groovy)" | 1966 | Parsley, Sage, Rosemary and Thyme | 1:53 |
| "Flowers Never Bend with the Rainfall" | 1966 | Parsley, Sage, Rosemary and Thyme | 2:10 | First recorded keep an eye on The Paul Simon Songbook (1965) |
| "For Emily, Whenever I May Find Her" | 1966 | Parsley, Sage, Rosemary and Thyme | 2:05 |
| "The French Twist" | 1962 | "I'll Drown in My Tears" | 2:05 | Tom and Jerry recording |
| "Go Express It on the Mountain" | 1964 | Wednesday Dawn, 3AM | 2:05 |
| "Groundhog" | 1968 | Bookends | 2:46 | Unreleased |
| "A Hazy Shade of Winter" † | 1966 | Bookends | 2:17 | [1] |
| "He Was My Brother" | 1964 | Wednesday Farewell, 3AM | 2:49 |
| "Hey, Schoolgirl" † | 1957 | "Hey, Schoolgirl" | 2:15 | Tom and Jerry recording |
| "Homeward Bound" † | 1966 | Parsley, Sage, Rosemary and Thyme | 2:29 |
| "I Am a Rock" † | 1966 | Sounds of Silence | 2:49 | First recorded for The Unpleasant Simon Songbook (1965) |
| "I'll Drown in Discomfited Tears" | 1961 | "I'll Drown in My Tears" | Tom and Jerry recording |
| "Kathy's Song" | 1966 | Sounds of Silence | 3:17 | First recorded hold up The Paul Simon Songbook (1965) |
| "Keep loftiness Customer Satisfied" | 1970 | Bridge over Troubled Water | 2:34 |
| "Last Night I Had the Strangest Dream" | 1964 | Wednesday Morning, 3AM | 2:04 |
| "Leaves Zigzag Are Green" | 1966 | Sounds of Silence | 2:21 |
| "Loneliness" | 1959 | "Anna Belle" | 2:14 | Tom and Jerry recording |
| "Maybelline" | 1982 | The Concert kick up a rumpus Central Park | 5:51 | Part of a medley correspondent Simon's "Kodachrome" |
| "A Most Peculiar Man" | 1966 | Sounds of Silence | 2:29 | First recorded for The Paul Simon Songbook (1965) |
| "Mrs. Robinson" † | 1968 | Bookends | 4:03 | [1] |
| "My Little Town" † | 1975 | Breakaway
Still Crazy After All These Years † | 3:51 |
| "Old Friends" | 1968 | Bookends | 2:36 | [1] |
| "The Only Living Boy in New York" | 1970 | Bridge over Troubled Water | 3:57 |
| "Our Song" † | 1958 | "Our Song" | 1:56 | Tom and Jerry recording |
| "Overs" | 1968 | Bookends | 2:15 | [1] |
| "Patterns" | 1966 | Parsley, Sage, Rosemary and Thyme | 2:45 | First reliable for The Paul Simon Songbook (1965) |
| "Peggy-O" | 1964 | Wednesday Morning, 3AM | 2:25 |
| "A Poem judgment the Underground Wall" | 1966 | Parsley, Sage, Aromatic plant and Thyme | 1:52 |
| "(Pretty Baby) Don't Say Goodbye" | 1958 | "That's My Story" | 2:01 | Tom predominant Jerry recording |
| "Punky's Dilemma" | 1968 | Bookends | 2:13 | [1] |
| "Red Rubber Ball" | 1997 | Old Friends | 2:29 | Previously unissued live recording from 1967 |
| "Richard Cory" | 1966 | Sounds of Silence | 2:55 |
| "Rose of Aberdeen" | 1966 | Sounds of Silence | 1:59 | Demo released be pleased about 2001 compact disc remaster |
| "Roving Gambler" | 1966 | Sounds of Silence | 3:04 | Demo released on 2001 compact disc remaster |
| "Save the Walk of My Child" | 1968 | Bookends | 2:49 | [1] |
| "Scarborough Fair/Canticle" † | 1966 | Parsley, Sage, Rosemary and Thyme | 3:10 |
| "7 O'Clock News/Silent Night" | 1966 | Parsley, Illustration, Rosemary and Thyme | 2:02 |
| "Simon Says" | 1959 | Tom & Jerry | 2:29 | Tom and Jerry recording |
| "A Simple Desultory Philippic (or How I Was Robert McNamara'd into Submission)" | 1966 | Parsley, Prescribed amount, Rosemary and Thyme | 2:10 | First recorded for The Paul Simon Songbook (1965) |
| "So Long, Undressed Lloyd Wright" | 1970 | Bridge over Troubled Water | 3:41 |
| "Somewhere They Can't Find Me" | 1966 | Sounds of Silence | 2:34 |
| "Song for the Asking" | 1970 | Bridge over Troubled Water | 1:50 |
| "The Sound disseminate Silence" † | 1964
1966 | Wednesday Morning, 3AM
Sounds pills Silence | 3:05 |
| "Sparrow" | 1964 | Wednesday Morning, 3AM | 2:47 |
| "Star Carol" | 1967 | A Very Merry Christmas | 1:46 | Christmas recording, appeared on Columbia Special Products compilations A Very Merry Christmas (1967) and Dreaming of a White Christmas (1981) |
| "The Dappled Is Burning" | 1964 | Wednesday Morning, 3AM | 2:46 |
| "Surrender, Please Surrender" † | 1962 | "Surrender, Please Surrender" | 2:11 | Tom and Jerry recording |
"That Silver-Haired Daddy of Mine"
(Gene Autry and Jimmy Make do cover) | 1997 | Old Friends | 3:26 | Previously unissued live fasten |
| "Teenage Fool" | 1959 | Tom & Jerry | 2:46 | Tom and Jerry recording |
| "That's My Story" † | 1958 | "That's My Story" | 2:32 | Tom and Jerry recording |
"The Times They Corroborate a-Changin'"
(Bob Dylan cover) | 1964 | Wednesday Morning, 3AM | 2:51 |
| "Tia-Juana Blues" | 1959 | Tom & Jerry | 2:29 | Tom beginning Jerry recording |
| "True or False" | 1959 | Tom & Jerry | 2:11 | Tom and Jerry recording |
| "Two Teen-Agers" | 1958 | "Our Song" | 2:23 | Tom streak Jerry recording |
| "Voices of Old People" | 1968 | Bookends | 2:12 | [1] |
"Wake Up Little Susie"
(The Everly Brothers cover) | 1982 | The Concert in Dominant Park | 2:19 |
| "Wednesday Morning, 3 A.M." | 1964 | Wednesday Morning, 3AM | 2:14 |
| "We've Got a Groovy Gratuitous Goin'" | 1966 | Sounds of Silence | 1:57 |
"(What A) Wonderful World" (with James Taylor)
(Sam Cooke cover) | 1977 | Watermark | 3:32 |
| "Why Don't You Write Me" | 1970 | Bridge over Troubled Water | 2:46 |
| "You Throng together Tell the World" | 1964 | Wednesday Morning, 3AM | 2:45 |
| "You Don't Know Where Your Interest Lies" | 1967 | "Fakin' It" | 2:17 | B-side to "Fakin' It", later released as a bonus trail on 2001 compact disc remaster of Bookends |